Watermelon – SNP Genotyping

(Citrullus lanatus (Thunb.) Matsum. & Nakai)

To support watermelon (Citrullus lanatus) research and breeding, we offer a ready-to-use GBTS panel designed for high-throughput, cost-effective genotyping. This panel delivers reliable results, making it ideal for scientific research and breeding applications.

These panels capture key trait-associated markers and provide reliable, cost-effective genotyping solutions for genetic analysis, germplasm evaluation, trait discovery, and the development of improved warermelon varieties.

For projects with specific genotyping requirements, custom GBTS panels can be developed. Contact us to discuss a solution tailored to your breeding program.

Contact our Experts

MARKER QUALITY

Enriched polymorphism selection

GENOME COVERAGE

Even marker distribution

LOWER COSTS

Cost-effective sequencing

PANEL DENSITY

Low, medium & high density

Available panels

GenoBaits® Watermelon 2K Panel

Technology

GenoBaits®

Core SNP

2765

mSNP

2806

InDel

4

Target Segments

0

Site Type

SNP, InDel, SSR

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Documentation

Marker Panel SNP List Watermelon 2K

Product Highlights

Enriched Polymorphism Selection and Broad Genetic Coverage

Our panels provide comprehensive coverage of genetic variation across diverse watermelon germplasm resources, supporting genetic characterisation and breeding applications.

Flexible Marker Densities Designed for Different Applications

Our ready-to-use GBTS panels are available with flexible marker densities from low to high, allowing researchers to optimise cost, throughput, and analytical requirements. Marker number adjustment and panel upgrade services are also available.

GenoBaits® Watermelon Panel

The 2K watermelon marker panel includes 2,740 background markers and 19 SSR (Simple Sequence Repeat) markers based on industry standards. Approximately 59.82% of markers are located in exonic regions. The panel covers 14 functional traits, including disease resistance, fruit shape, fruit colour, and taste-related characteristics. It provides high-throughput, cost-effective, accurate, and reproducible genotyping for watermelon research and breeding applications.

GenoBaits® Watermelon 2K Panel

The 2K marker panel includes 2,740 background markers and 19 SSR (Simple Sequence Repeat) sites based on industry standards, with 59.82% located in exonic regions. It covers 14 functional traits, including disease resistance, fruit shape, colour, and taste. This panel offers high throughput, low cost, and excellent data accuracy and reproducibility, making it ideal for scientific research and breeding applications in watermelon.

Applications

Discovery service

  • Germplasm identification and DNA fingerprint construction
  • Genetic diversity analysis
  • Functional gene mining and identification
  • GWAS/QTL analysis
Breeding service
  • Variety identification
  • Parental line purification
  • Marker-assisted selection
  • Genome-wide selection breeding

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Submit your details and request more information about the panel you’re interest in. Whether it’s for an existing panel listed here or a new inquiry, please complete the form below, and we will respond promptly with further information.

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MEET OUR TEAM

Steve AsquithManaging Director
Steve began his career in the Genetics Division of GlaxoSmithKline, as part of the team establishing GSK’s high-throughput core genotyping laboratory. Steve joined KBioscience when it was first founded in 2002 and was a key driver in taking the company from a small start-up to a multi-national service laboratory, quickly growing the company’s revenue to over $7.5M p.a. Following the acquisition of Kbioscience by LGC in 2011, Steve was appointed Global Director of Operations for LGC Genomics, responsible for over 100 staff in Europe and N. America, successfully elevating the genotyping products and service business. Steve held a crucial leadership role until he left in 2016. In 2017 Steve joined forces with John Holme to create 3CR Bioscience, a new company with a mission to deliver outstanding, customer-focused genotyping products with innovation and affordability at its core.
Dr. John HolmeTechnical Director

John joined KBioscience shortly after it was founded, in 2003, and became Head of Technical Development, building the company’s genotyping and DNA extraction product portfolio and service delivery until 2011 when it was acquired by LGC. Post-acquisition, John was appointed Head of Technical Group for LGC Genomics, in charge of all Research & Development and Technical Support activities for the company. In this role John continued to build on the high-quality products and services provided to the companies growing customer base.

During the 19 years John has worked in commercial R&D, he has co-invented numerous highly successful products including PACE®, ProbeSure, KASP™, KlearKall, KlearGene, KlearAmp and KlearTaq™, creating breakthrough offerings in genotyping and extraction and generating huge revenues for the companies he has worked in. In 2017, he joined forces with Steve Asquith and started 3CR Bioscience. John is dedicated to developing outstanding, innovative genotyping products and providing the very best technical support to customers globally.

Dr. Nisha JainOperations Director

Nisha has been innovating since the start of her career at Geneform Technologies developing Iso-thermal Genotyping Technologies. Nisha joined KBioscience in 2008, as Senior R&D Scientist and key account Technical Support Scientist, developing KASP and Klearkall performance and coinventing two further versions of KASP.

Nisha has more than 15 years’ experience working in molecular biology and genotyping technologies, with extensive experience in the areas of R&D, Quality Assurance and Customer Technical Support. She has technically assisted many giants of the industry with their protocol development and troubleshooting and continues to deliver high-quality support and guidance. In 2018, Nisha joined 3CR Bioscience as Operations Director where she continues to develop PACE and ProbeSure for an increasing range of applications, and to grow 3CR Bioscience’s new product pipeline. Nisha is dedicated to developing outstanding, innovative genotyping products and providing the very best technical support to customers globally.

Nazma SaffinGeneral Manager

For 20 years Nazma Saffin has worked and gained extensive expertise within the genotyping sector. Working at Kbioscience and then LGC, she has held operational leadership posts responsible for manufacturing and laboratory services. With experience of ISO 9001 implementation, production scale up and LEAN operations, Nazma has successfully led highly profitable production departments. Joining 3CR Bioscience in 2022, Nazma is committed to delivering operational excellence.

Greig PollandAutomation and Support Manager

Greig is a hands-on automation specialist and team leader with a strong background in laboratory and industrial automation. He has spent over 25 years developing, installing, and supporting automated systems that transformed laboratory workflows. During this time, Greig worked closely with scientists and engineers to tailor automation solutions for genotyping and molecular biology, an experience that sparked his lasting passion for combining technology with practical science.

Since then, Greig has built on that foundation through leadership roles where he leads automation and support operations. He’s known for being approachable, commercially minded, and deeply committed to helping teams and customers get the best from their technology.

Whether managing a complex automation rollout or helping a customer troubleshoot in real time, Greig brings a thoughtful, collaborative approach that keeps people ,not just machines, at the centre of what he does.

Daniel LawsonMarketing Manager
Daniel is a strategically minded marketing and communications professional with over a decade of experience delivering integrated, multi-channel campaigns across healthcare, legal and not-for-profit sectors. He has a strong track record in building brand visibility, driving engagement and supporting revenue growth through audience-focused marketing.
Prior to joining 3CR Bioscience in 2025, Daniel held senior marketing roles where he led strategic communications, managed brand development and delivered high-impact digital and content campaigns. His experience spans SEO, CRM, PR, events and stakeholder engagement, with a particular strength in translating complex messages into clear, compelling content.
At 3CR Bioscience, Daniel is responsible for shaping and executing the company’s marketing strategy, enhancing brand presence and supporting commercial growth through targeted, data-driven campaigns.